Commit 946188c7 authored by Rane Squires's avatar Rane Squires

Add environment variable to exec resource for installing bioinformatics...

Add environment variable to exec resource for installing bioinformatics environment to hopefully solve puppet automatic install issue
parent 8856df79
Pipeline #135 canceled with stages
...@@ -58,6 +58,7 @@ class anaconda::environments { ...@@ -58,6 +58,7 @@ class anaconda::environments {
exec { 'setupbioinformatics': exec { 'setupbioinformatics':
unless => "conda env list | grep -q '/opt/anaconda/envs/bioinformatics'", unless => "conda env list | grep -q '/opt/anaconda/envs/bioinformatics'",
command => 'conda env create -f /opt/envs/bioinformatics.yml', command => 'conda env create -f /opt/envs/bioinformatics.yml',
environment => ["SHELL=/bin/bash"],
require => File['/opt/envs/bioinformatics.yml'], require => File['/opt/envs/bioinformatics.yml'],
path => ['/bin','/opt/anaconda/bin'] path => ['/bin','/opt/anaconda/bin']
} }
......
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