Remove 'updatetest' and add 'bioinformatics'

manifests/environments.pp

@@ -23,19 +23,6 @@ class anaconda::environments {
     path    => ['/bin','/opt/miniconda/bin']
   }
   
-  file { '/opt/envs/updatecheck.yml':
-    ensure  => present,
-    source  => 'puppet:///modules/anaconda/updatecheck.yml',
-    require => File['/opt/envs'],
-  }
-
-  exec { 'setupupdatecheck':
-    unless  => "conda env list | grep -q 'updatecheck'",
-    command => 'conda env create -f /opt/envs/updatecheck.yml',
-    require => File['/opt/envs/updatecheck.yml'],
-    path    => ['/bin','/opt/miniconda/bin']
-  }
-  
   file { '/opt/envs/tensorflow.yml':
     ensure  => present,
     source  => 'puppet:///modules/anaconda/tensorflow.yml',
@@ -61,5 +48,24 @@ class anaconda::environments {
     require => [File['/opt/envs/tensorflow-gpu.yml'], Exec['setuptensorflow']],
     path    => ['/bin','/opt/miniconda/bin']
   }
+  
+  file { '/opt/envs/bioinformatics.yml':
+    ensure  => present,
+    source  => 'puppet:///modules/anaconda/bioinformatics.yml',
+    require => File['/opt/envs'],
+  }
+  
+  exec {'setbioinformaticschannels':
+    command => 'conda config --add channels defaults,bioconda,conda-forge'
+    require => File['/opt/envs/bioinformatics.yml']
+    path    => ['/bin','/opt/miniconda/bin']
+  }
+
+  exec { 'setupbioinformatics':
+    unless  => "conda env list | grep -q 'bioinformatics'",
+    command => 'conda env create -f /opt/envs/bioinformatics.yml',
+    require => [File['/opt/envs/bioinformatics.yml'], Exec['setbioinformaticschannels']],
+    path    => ['/bin','/opt/miniconda/bin']
+  }
 
 }