Commit 63ba2e60 authored by Rane Squires's avatar Rane Squires

Remove setupbioinformatics channels exec

parent 25050210
Pipeline #101 canceled with stages
......@@ -54,17 +54,11 @@ class anaconda::environments {
source => 'puppet:///modules/anaconda/bioinformatics.yml',
require => File['/opt/envs'],
}
exec {'setbioinformaticschannels':
command => 'conda config --add channels defaults && conda config --add channels bioconda && conda config --add channels conda-forge'
require => File['/opt/envs/bioinformatics.yml']
path => ['/bin','/opt/miniconda/bin']
}
exec { 'setupbioinformatics':
unless => "conda env list | grep -q 'bioinformatics'",
command => 'conda env create -f /opt/envs/bioinformatics.yml',
require => [File['/opt/envs/bioinformatics.yml'], Exec['setbioinformaticschannels']],
require => File['/opt/envs/bioinformatics.yml'],
path => ['/bin','/opt/miniconda/bin']
}
......
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