Add Qiime dependencies

files/bioinformatics.yml

 name: bioinformatics
 channels:
+- qiime2/label/r2019.7
 - conda-forge
 - bioconda
 - defaults
@@ -92,5 +93,326 @@ dependencies:
 - wheel=0.33.4=py37_0
 - xz=5.2.4=h14c3975_4
 - zlib=1.2.11=h7b6447c_3
+- _libgcc_mutex=0.1
+- _r-mutex=1.0.1
+- arb-bio-tools=6.0.6
+- asn1crypto=0.24.0
+- atomicwrites=1.3.0
+- attrs=19.1.0
+- backcall=0.1.0
+- bibtexparser=1.1.0
+- binutils_impl_linux-64=2.31.1
+- binutils_linux-64=2.31.1
+- bioconductor-biobase=2.42.0
+- bioconductor-biocgenerics=0.28.0
+- bioconductor-biocparallel=1.16.6
+- bioconductor-biostrings=2.50.2
+- bioconductor-dada2=1.10.0
+- bioconductor-delayedarray=0.8.0
+- bioconductor-genomeinfodb=1.18.1
+- bioconductor-genomeinfodbdata=1.2.1
+- bioconductor-genomicalignments=1.18.1
+- bioconductor-genomicranges=1.34.0
+- bioconductor-iranges=2.16.0
+- bioconductor-rsamtools=1.34.0
+- bioconductor-s4vectors=0.20.1
+- bioconductor-shortread=1.40.0
+- bioconductor-summarizedexperiment=1.12.0
+- bioconductor-xvector=0.22.0
+- bioconductor-zlibbioc=1.28.0
+- biom-format=2.1.7
+- blas=2.11
+- blast=2.9.0
+- bleach=3.1.0
+- bokeh=1.3.1
+- boost=1.68.0
+- boost-cpp=1.68.0
+- bwidget=1.9.11
+- bz2file=0.98
+- bzip2=1.0.8
+- ca-certificates=2019.6.16
+- cachecontrol=0.12.5
+- cairo=1.16.0
+- certifi=2019.6.16
+- cffi=1.12.3
+- chardet=3.0.4
+- click=7.0
+- cryptography=2.7
+- curl=7.65.3
+- cutadapt=2.4
+- cycler=0.10.0
+- dbus=1.13.6
+- deblur=1.1.0
+- decorator=4.4.0
+- defusedxml=0.5.0
+- dnaio=0.3
+- emperor=1.0.0b19
+- entrypoints=0.3
+- expat=2.2.5
+- fastcluster=1.1.25
+- fasttree=2.1.10
+- fontconfig=2.13.1
+- freetype=2.10.0
+- future=0.17.1
+- gcc_impl_linux-64=7.3.0
+- gcc_linux-64=7.3.0
+- gettext=0.19.8.1
+- gfortran_impl_linux-64=7.3.0
+- gfortran_linux-64=7.3.0
+- glib=2.58.3
+- gmp=6.1.2
+- gneiss=0.4.5
+- gnutls=3.6.5
+- graphite2=1.3.13
+- gsl=2.5
+- gst-plugins-base=1.14.5
+- gstreamer=1.14.5
+- gxx_impl_linux-64=7.3.0
+- gxx_linux-64=7.3.0
+- h5py=2.9.0
+- harfbuzz=2.4.0
+- hdf5=1.10.4
+- hdmedians=0.13
+- icu=58.2
+- idna=2.8
+- ijson=2.3
+- importlib_metadata=0.18
+- ipykernel=5.1.1
+- ipython=7.7.0
+- ipython_genutils=0.2.0
+- ipywidgets=7.5.1
+- iqtree=1.6.11
+- jedi=0.14.1
+- jinja2=2.10.1
+- joblib=0.13.2
+- jpeg=9c
+- jsonschema=3.0.1
+- jupyter_client=5.3.1
+- jupyter_core=4.4.0
+- kiwisolver=1.1.0
+- krb5=1.16.3
+- libarbdb=6.0.6
+- libblas=3.8.0
+- libcblas=3.8.0
+- libcurl=7.65.3
+- libedit=3.1.20170329
+- libffi=3.2.1
+- libgcc=7.2.0
+- libgcc-ng=9.1.0
+- libgfortran-ng=7.3.0
+- libiconv=1.15
+- liblapack=3.8.0
+- liblapacke=3.8.0
+- libopenblas=0.3.6
+- libpng=1.6.37
+- libsodium=1.0.17
+- libssh2=1.8.2
+- libstdcxx-ng=9.1.0
+- libtiff=4.0.10
+- libuuid=2.32.1
+- libxcb=1.13
+- libxml2=2.9.9
+- lockfile=0.12.2
+- lz4-c=1.8.3
+- mafft=7.310
+- make=4.2.1
+- markupsafe=1.1.1
+- matplotlib=3.1.1
+- matplotlib-base=3.1.1
+- mistune=0.8.4
+- more-itertools=7.2.0
+- msgpack-python=0.6.1
+- natsort=6.0.0
+- nbconvert=5.5.0
+- nbformat=4.4.0
+- ncurses=6.1
+- nettle=3.4.1
+- networkx=2.3
+- nose=1.3.7
+- notebook=6.0.0
+- numpy=1.17.0
+- olefile=0.46
+- openjdk=11.0.1
+- openssl=1.1.1c
+- packaging=19.0
+- pandas=0.24.2
+- pandoc=2.7.3
+- pandocfilters=1.4.2
+- pango=1.40.14
+- parso=0.5.1
+- patsy=0.5.1
+- pcre=8.41
+- perl=5.26.2
+- perl-archive-tar=2.32
+- perl-carp=1.38
+- perl-common-sense=3.74
+- perl-compress-raw-bzip2=2.086
+- perl-compress-raw-zlib=2.086
+- perl-exporter=5.72
+- perl-exporter-tiny=1.002001
+- perl-extutils-makemaker=7.36
+- perl-io-compress=2.086
+- perl-io-zlib=1.10
+- perl-json=4.02
+- perl-json-xs=2.34
+- perl-list-moreutils=0.428
+- perl-list-moreutils-xs=0.428
+- perl-pathtools=3.75
+- perl-scalar-list-utils=1.50
+- perl-types-serialiser=1.0
+- perl-xsloader=0.24
+- pexpect=4.7.0
+- pickleshare=0.7.5
+- pigz=2.3.4
+- pillow=6.0.0
+- pip=19.2.1
+- pixman=0.38.0
+- pluggy=0.12.0
+- prometheus_client=0.7.1
+- prompt_toolkit=2.0.9
+- psutil=5.6.3
+- pthread-stubs=0.4
+- ptyprocess=0.6.0
+- py=1.8.0
+- pycparser=2.19
+- pygments=2.4.2
+- pyopenssl=19.0.0
+- pyparsing=2.3.0
+- pyqt=5.9.2
+- pyrsistent=0.15.4
+- pysocks=1.7.0
+- pytest=5.0.1
+- python=3.6.7
+- python-dateutil=2.8.0
+- pytz=2019.2
+- pyyaml=5.1.2
+- pyzmq=18.0.2
+- q2-alignment=2019.7.0
+- q2-composition=2019.7.0
+- q2-cutadapt=2019.7.0
+- q2-dada2=2019.7.0
+- q2-deblur=2019.7.0
+- q2-demux=2019.7.0
+- q2-diversity=2019.7.0
+- q2-emperor=2019.7.0
+- q2-feature-classifier=2019.7.0
+- q2-feature-table=2019.7.0
+- q2-fragment-insertion=2019.7.0
+- q2-gneiss=2019.7.0
+- q2-longitudinal=2019.7.0
+- q2-metadata=2019.7.0
+- q2-phylogeny=2019.7.0
+- q2-quality-control=2019.7.0
+- q2-quality-filter=2019.7.0
+- q2-sample-classifier=2019.7.1
+- q2-taxa=2019.7.0
+- q2-types=2019.7.0
+- q2-vsearch=2019.7.0
+- q2cli=2019.7.0
+- q2templates=2019.7.0
+- qiime2=2019.7.0
+- qt=5.9.7
+- r-assertthat=0.2.1
+- r-backports=1.1.4
+- r-base=3.5.1
+- r-bh=1.69.0_1
+- r-bitops=1.0_6
+- r-cli=1.1.0
+- r-cluster=2.1.0
+- r-colorspace=1.4_1
+- r-crayon=1.3.4
+- r-data.table=1.12.2
+- r-digest=0.6.20
+- r-ellipsis=0.2.0.1
+- r-fansi=0.4.0
+- r-formatr=1.7
+- r-futile.logger=1.4.3
+- r-futile.options=1.0.1
+- r-ggplot2=3.2.0
+- r-glue=1.3.1
+- r-gtable=0.3.0
+- r-hwriter=1.3.2
+- r-labeling=0.3
+- r-lambda.r=1.2.3
+- r-lattice=0.20_38
+- r-latticeextra=0.6_28
+- r-lazyeval=0.2.2
+- r-magrittr=1.5
+- r-mass=7.3_51.4
+- r-matrix=1.2_17
+- r-matrixstats=0.54.0
+- r-mgcv=1.8_28
+- r-munsell=0.5.0
+- r-nlme=3.1_140
+- r-permute=0.9_5
+- r-pillar=1.4.2
+- r-pkgconfig=2.0.2
+- r-plyr=1.8.4
+- r-r6=2.4.0
+- r-rcolorbrewer=1.1_2
+- r-rcpp=1.0.2
+- r-rcppparallel=4.4.3
+- r-rcurl=1.95_4.12
+- r-reshape2=1.4.3
+- r-rlang=0.4.0
+- r-scales=1.0.0
+- r-snow=0.4_3
+- r-stringi=1.4.3
+- r-stringr=1.4.0
+- r-tibble=2.1.3
+- r-utf8=1.1.4
+- r-vctrs=0.2.0
+- r-vegan=2.5_5
+- r-viridislite=0.3.0
+- r-withr=2.1.2
+- r-zeallot=0.1.0
+- raxml=8.2.12
+- readline=8.0
+- requests=2.22.0
+- scikit-bio=0.5.5
+- scikit-learn=0.21.2
+- scipy=1.3.0
+- seaborn=0.9.0
+- send2trash=1.5.0
+- setuptools=41.0.1
+- sina=1.6.0
+- sip=4.19.8
+- six=1.12.0
+- sortmerna=2.0
+- sqlite=3.29.0
+- statsmodels=0.10.1
+- tbb=2019.7
+- terminado=0.8.2
+- testpath=0.4.2
+- tk=8.6.9
+- tktable=2.10
+- tornado=6.0.3
+- traitlets=4.3.2
+- tzlocal=2.0.0
+- unifrac=0.10.0
+- urllib3=1.25.3
+- vsearch=2.7.0
+- wcwidth=0.1.7
+- webencodings=0.5.1
+- wheel=0.33.4
+- widgetsnbextension=3.5.1
+- xopen=0.7.3
+- xorg-kbproto=1.0.7
+- xorg-libice=1.0.10
+- xorg-libsm=1.2.3
+- xorg-libx11=1.6.8
+- xorg-libxau=1.0.9
+- xorg-libxdmcp=1.1.3
+- xorg-libxext=1.3.4
+- xorg-libxrender=0.9.10
+- xorg-renderproto=0.11.1
+- xorg-xextproto=7.3.0
+- xorg-xproto=7.0.31
+- xz=5.2.4
+- yaml=0.1.7
+- zeromq=4.3.2
+- zipp=0.5.1
+- zlib=1.2.11
+- zstd=1.4.0
 prefix: /opt/miniconda/envs/bioinformatics