Un-comment and add 'environment' line to exec "setupbioinformatics"

bf1ec3b9 · Rane Squires · 3cff0582 · bf1ec3b9
Commit bf1ec3b9 authored Dec 03, 2019 by Rane Squires
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Showing with 7 additions and 6 deletions

manifests/environments.pp manifests/environments.pp +7 -6

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--- a/manifests/environments.pp
+++ b/manifests/environments.pp
@@ -55,11 +55,12 @@ class anaconda::environments {
    require => File['/opt/envs'],
  }
-  #exec { 'setupbioinformatics':
+  exec { 'setupbioinformatics':
-  #  unless  => "conda env list | grep -q '/opt/anaconda/envs/bioinformatics'",
+    unless      => "conda env list | grep -q '/opt/anaconda/envs/bioinformatics'",
-  # command => 'conda env create -f /opt/envs/bioinformatics.yml',
+    command     => 'conda env create -f /opt/envs/bioinformatics.yml',
-  #  require => File['/opt/envs/bioinformatics.yml'],
+    environment => ["SHELL=/bin/bash"],
-  #  path    => ['/bin','/opt/anaconda/bin']
+    require     => File['/opt/envs/bioinformatics.yml'],
-  #}
+    path        => ['/bin','/opt/anaconda/bin']
+  }
 }